and O. Gros. (2010) First Description of Giant Archaea (Thaumarchaeota) Associated with Putative Bacterial Ectosymbionts in a Sulfidic Marine Habitat. Env Microbiol 12: 2,371—2,383.

Müller, H. J. (1964) The Relation of Recombination to Mutational Advance. Mutat Res 106: 2–9.

Mushegian, A. R., and E. V. Koonin. (1996a) Gene Order Is Not Conserved in Bacterial Evolution. Trends Genet 12: 289–290.

Mushegian, A. R., and E. V. Koonin. (1996b) A Minimal Gene Set for Cellular Life Derived by Comparison of Complete Bacterial Genomes. Proc Natl Acad Sci USA 93: 10,268—10,273.

Nelson, K. E., R. A. Clayton, S. R. Gill, M. L. Gwinn, R. J. Dodson, D. H. Haft, E. K. Hickey, J. D. Peterson, W. C. Nelson, K. A. Ketchum, L. McDonald, T. R. Utterback, J. A. Malek, K. D. Linher, M. M. Garrett, A. M. Stewart, M. D. Cotton, M. S. Pratt, C. A. Phillips, D. Richardson, J. Heidelberg, G. G. Sutton, R. D. Fleischmann, J. A. Eisen, O. White, S. L. Salzberg, H. O. Smith, J. C. Venter, and C. M. Fraser. (1999) Evidence for Lateral Gene Transfer Between Archaea and Bacteria from Genome Sequence of Thermotoga Maritima. Nature 399: 323–329.

Netzer, N., J. M. Goodenbour, A. David, K. A. Dittmar, R. B. Jones, J. R. Schneider, D. Boone, E. M. Eves, M. R. Rosner, J. S. Gibbs, A. Embry, B. Dolan, S. Das, H. D. Hickman, P. Berglund, J. R. Bennink, J. W. Yewdell, and T. Pan. (2009) Innate Immune and Chemically Triggered Oxidative Stress Modifies Translational Fidelity. Nature 462: 522–526.

Neupert, W., and J. M. Herrmann. (2007) Translocation of Proteins into Mitochondria. Annu Rev Biochem 76: 723–749.

Novichkov, P. S., M. V. Omelchenko, M. S. Gelfand, A. A. Mironov, Y. I. Wolf, and E. V. Koonin. (2004) Genome-Wide Molecular Clock and Horizontal Gene Transfer in Bacterial Evolution. J Bacteriol, in press.

Novichkov, P. S., Y. I. Wolf, I. Dubchak, and E. V. Koonin. (2009) Trends in Prokaryotic Evolution Revealed by Comparison of Closely Related Bacterial and Archaeal Genomes. J Bacteriol 191: 65–73.

Novozhilov, A. S., and E. V. Koonin. (2009) Exceptional Error Minimization in Putative Primordial Genetic Codes. Biol Direct 4: 44.

Nunoura, T., Y. Takaki, J. Kakuta, S. Nishi, J. Sugahara, H. Kazama, G. J. Chee, M. Hattori, A. Kanai, H. Atomi, K. Takai, and H. Takami. (2010) Insights into the Evolution of Archaea and Eukaryotic Protein Modifier Systems Revealed by the Genome of a Novel Archaeal Group. Nucleic Acids Res Dec. 15 [Epub ahead of print].

O’Maille, P. E., A. Malone, N. Dellas, B. Andes Hess Jr., L. Smentek, I. Sheehan, B. T. Greenhagen, J. Chappell, G. Manning, and J. P. Noel. (2008) Quantitative Exploration of the Catalytic Landscape Separating Divergent Plant Sesquiterpene Synthases. Nat Chem Biol 4: 617–623.

O’Malley, M. A. (2009) What Did Darwin Say About Microbes, and How Did Microbiology Respond? Trends Microbiol 17: 341–347.

O’Malley, M. A., ed. (2010) Special Issue: The Tree of Life. Biology and Philosophy.

O’Malley, M. A., and Y. Boucher. (2005) Paradigm Change in Evolutionary Microbiology.